Start your day with a freshly baked batch of healthy Chocolate Zucchini Muffins that are packed with nutritious ingredients! They are made with whole wheat flour, raw sugar, and completely dairy-free!
If you are a chocolate lover and enjoy baking, but want to stay on the healthy side, you need to try these scrumptious Chocolate Zucchini Muffins! They have rich chocolate flavor, yet are absolutely healthy!
This recipe is based on my popular Carrot Zucchini Muffins and have a similar light and fluffy texture.
If you are looking for more baking ideas, you might also like my Morning Glory Muffins, Healthy Chocolate Chip Banana Muffins, and Cinnamon Muffins with Glaze.
What makes these muffins healthy
When you taste these muffins, you’ll never believe that they are healthy. Rich, moist, flavorful, they have everything you want in baked goods! In addition to the decadent flavor, they are packed with healthy ingredients, like:
- Whole wheat flour
- Raw Cane sugar/ Coconut Sugar
- Vegetable oil
- Zucchini
- Walnuts
How to make it
Preheat the oven to 375°F, line a muffin pan with cupcake liners, and set aside. If you don’t want to use liners, you can just grease the muffin pan with vegetable oil or non-stick spray.
In a mixing bowl, mix dry ingredients (whole wheat flour, cocoa powder, baking soda, baking powder, cinnamon, and salt) (Photos 1-4).
In a large mixing bowl, whisk together wet ingredients (vegetable oil, apple sauce, eggs, sugar, and vanilla extract) (Photos 5-10).
Add dry ingredients to wet ones and fold it in (Photos 11-12).
Then prepare the zucchini. Wash them thoroughly and grate, using a large grater. Squeeze the juices through a cloth or a clean towel (Photos 13-15).
Add grated zucchini and chopped walnuts, and fold it in (Photos 16-19).
Divide the mixture between 12 muffin tins. Bake at 375°F for about 20-25 minutes, or until a toothpick inserted in the middle comes out clean.
Take them out of the oven and let sit on the counter in a muffin pan for about 10 minutes, then transfer to a wire rack to cool off completely.
Tips for best results
- Make sure you squeeze out all the extra juices from grated zucchini before adding them to the batter. That will prevent the muffins from getting soggy.
- Don’t overmix the batter or it will come out tough.
Options and Substitutions
Walnuts. If you are allergic to nuts or simply don’t like them, you can use chocolate chips instead.
Sugar. I like to use raw cane sugar, but you can easily swap it with coconut sugar. Just make sure you don’t use maple syrup, otherwise they will come out soggy.
Frequently Asked Questions
It is all about leavening. We need to use the right ratio of baking soda and baking powder to generate the rise. If you don’t put enough, they won’t rise. Put too much, and they will rise too quickly and then will collapse.
Make sure you don’t leave them sitting on the counter uncovered. After they cooled off, they should be stored in an air-tight container or a zip-lock bag.
Line a piece of paper towel on the bottom of the container, put the muffins on top, and place another piece of paper towel on top, then close the lid. This way the towel will help to absorb any excess moisture from the muffins, so they don’t get soggy.
They will stay fresh for about 3 days if you keep at room temperature or about a week if you refrigerate.
If you want to freeze them, wrap each muffin with a plastic wrap or foil, then put in a zip-lock bag. You can freeze them for up to 2 months. When ready to eat, you can take them out of the freezer and let sit on a counter for about 20 minutes.
Did you make this recipe?!? I’d love to know how it turned out! leave a comment and a rating below👇 thank you!
Healthy Chocolate Zucchini Muffins
Ingredients
- 1 ¾ cups whole wheat flour
- ¼ cup unsweetened cocoa powder
- 1 teaspoon baking soda
- 1 teaspoon baking powder
- ½ teaspoon cinnamon
- ¼ teaspoon salt
- ½ cup vegetable oil
- ¼ cup unsweetened apple sauce
- 1 cup raw cane sugar or coconut sugar
- 3 large eggs room temperature
- 1 teaspoon vanilla extract
- 2 cups zucchini grated, squeezed from juices
- ¾ cup walnuts chopped
Instructions
- Preheat the oven to 375°F, line a muffin pan with cupcake liners, and set aside. If you don’t want to use liners, you can just grease the muffin pan with vegetable oil or non-stick spray.
- In a mixing bowl, mix dry ingredients (whole wheat flour, cocoa powder, baking soda, baking powder, cinnamon, and salt).
- In a large mixing bowl, whisk together wet ingredients (vegetable oil, apple sauce, eggs, sugar, and vanilla extract).
- Add dry ingredients to wet ones and fold it in.
- Wash zucchini thoroughly and grate, using a large grater. Squeeze the juices through a cloth or a clean towel.
- Add grated zucchini and chopped walnuts, and fold it in.
- Divide the mixture between 12 muffin tins. Bake at 375°F for about 20-25 minutes, or until a tooth pick inserted in the middle comes out clean.
- Take them out of the oven and let sit on the counter in a muffin pan for about 10 minutes, then transfer to a wire rack to cool off completely.
Video
Notes
Nutrition
Update Notes: This post was originally published in 2017, but was republished with new photos, step by step instructions, tips, and FAQs in July of 2020.
I am loving this idea of zucchini and chocolate combined! what an interesting combo. This is such a great way to eat muffins in a healthier way. I love trying new things and this recipe is perfect for that, thank you for sharing!
I would LOVE to start my day with a chocolate zucchini muffin!! It’s crazy how my normally picky son devours these.
This muffin absolutely can get me a big hug from my kid 🙂 And I love the fact that this use zucchini in it!
I just bought a ton of zucchini on sale and had no idea what I was going to do with. Thankful I found this!
Muffins are one of my favorites! These Chocolate Zucchini Muffins look so mouthwatering that I am starting to crave!
these muffins are so good you can’t even taste the zucchini. Making these again over the weekend!
Hi can the coconut oil be substituted for applesauce or olive oil? thanks
Looks delicious I have one zucchini in my fridge I will give this one a try as my son love chocolate muffins.
Thank you, Swathi)
YUM! This is so perfect for back to school season. Love it!
Thank you, Christine)
My daughter can detect a zucchini bit no matter how well I’ve hidden it. Maybe this recipe will be her undoing!
Thank you, Noel! They taste just like chocolate muffins)
I’ve made Zucchini muffins before but never added chocolate to the mix. Always wondered should I? Should I not? – Your recipe sounds yum. Can’t wait to try.
Thank you, Veena! You definitely should try this chocolate version! They taste like real chocolate muffins, but more nutritious)
This is such a great way to use all that garden zucchini. Great breads and muffins that are do nice and moist. I would eat these for breakfast, lunch or snack any day of the week.
Thank you, Gloria)
Ok – just yum! I love zucchini nut bread but haven’t had it with chocolate. The next time hubby says he’s craving chocolate, I’ll make these. I have a ton of zucchini in my freezer from Summer’s bounty
Thank you, Alicia) Your husband will love these muffins!
Love muffins that are loaded with veggies like this! Especially chocolate muffins. What a great way to enjoy chocolate and get some yummy added nutritional value too!
Thank you, Marlyn!
I’ve made one sweet treat with zucchini, and crazy enough, it didn’t contain chocolate! Which is really crazy because chocolate is my favorite. I’ve got to make these.
Thank you, Joanna) I am sure you will love them!